MicrobeLLM Admin Interface

Web-based administration system for managing microbial phenotype predictions

A. Processing Dashboard
Phenotype Prediction Jobs
Species Files
GPT-4o
Claude-3.5
Gemini-1.5
Llama-3.1
bacteria_set1.txt
250/250
Complete
168/250
Running...
250/250
Complete
45/250
Failed
pathogens.txt
185/185
Complete
185/185
Complete
92/185
Running...
Start
Not Started
soil_microbes.txt
89/320
Running...
Start
Not Started
Start
Not Started
Start
Not Started
marine_bacteria.txt
156/156
Complete
156/156
Complete
156/156
Complete
78/156
Running...
B. Data Import/Export
Import Data
Upload CSV files with species lists or ground truth data
Drag & drop files here or click to browse
Export Results
Download predictions in CSV or JSON format
C. Prediction Validation
94.2%
Accuracy
0.91
F1 Score
0.89
MCC
D. Database Browser
Ground Truth
Predictions
Models
Templates
Species Gram Staining Motility Spore Formation Pathogenicity Dataset
Escherichia coli Negative True False Variable LA_Test_Dataset
Bacillus subtilis Positive True True False LA_Test_Dataset
Staphylococcus aureus Positive False False True LA_Test_Dataset
Pseudomonas aeruginosa Negative True False True LA_Test_Dataset
Clostridium botulinum Positive True True True LA_Test_Dataset
Figure X. MicrobeLLM administrative interface for managing phenotype prediction workflows. (A) Processing dashboard showing real-time job status across multiple LLM models and species datasets. The grid interface allows monitoring of prediction progress with color-coded status indicators (green: complete, blue: running, red: failed, gray: not started). (B) Data import/export module supporting batch upload of species lists and download of prediction results in standard formats. (C) Validation interface for calculating accuracy metrics against ground truth datasets, displaying key performance indicators including accuracy, F1 score, and Matthews correlation coefficient. (D) Integrated database browser providing direct access to ground truth data, predictions, model configurations, and template definitions with export capabilities.